PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G08460.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 822aa    MW: 89024.9 Da    PI: 6.4685
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G08460.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11646694355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  LPERR03G08460.2 646 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 694
                      58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500538.742192IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.905.8E-72097No hitNo description
PROSITE profilePS5018110.902337383IPR001810F-box domain
SuperFamilySSF813834.58E-13337409IPR001810F-box domain
Gene3DG3DSA:1.20.1280.508.7E-11340418No hitNo description
PfamPF006464.8E-5342384IPR001810F-box domain
SMARTSM002569.3E-5343383IPR001810F-box domain
CDDcd000833.09E-11641698No hitNo description
SuperFamilySSF474594.32E-17641709IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796643693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17643711IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-9646694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10649699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MKLRLRSMDH RGAAAAAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLAADPSA TLPALGVASG DLLYFTLSPL ASPAPAPPQP PRQPQPLPRN PSPDVTSIAR  120
AVAPAKSAVE SGSSSSLPQA LCVNPGLPSA SVPHPPVDVV MAEAIAETKR TSSFVVRVMK  180
REMENAGVAD GTVIYRLAVA LHAALIDSGF LSANAVGSRL QLPYDWASGS SIPVSVKYTL  240
PELVAELPAV EEGMVAVLNY SLMGNYMMIY GYVPGVKPEV QRLCLELPKL APLLYLDSDE  300
VSASEEREIH GLWRMLKDEI CLPLMILLCR LNNLSFPPCL MALPGDVKAK VLEFVPGVNL  360
ARVQCTCKEL RDLAADDNLW KKKCEMEFNA QGEGSRVSRN WKERFVAAWK VSANKRPRML  420
SPRFLNYGWG NPYSPHGFPT GSHLLGSPIF LGAALGISAG TSHPAAILVD NVTTFLVYLC  480
NYGQKPVAEL SRAAVNSQGH CFAVGDNQLA SLDLAMDFDE PILFPVHNAG LQEGVQFYNP  540
TSDTQLSRNM SIDKCLKGSK RKGSGEGSSS LHSQVTDNYN SLLLDHLLGA CIILSSPKIV  600
LVQEETGEMS QREISMEHVG EKVVGDADTS RDDYVHVRAK RGQATNSHSL AERFRREKIN  660
ERMKLLQDLV PGCNKITGKA MMLDEIINYV QSLQRQVEFL SMKLSTISPE LNSELDLQEI  720
LCSQDAHSAL FLGCSPRLSS ASPNLYRAAQ QGLSRPGLYG SLSVPTPADA HMARTAHMAE  780
FPQQRGLVWN DELHNIAPAS FSFTSDAAGT GSLENSDSMK VE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351570.0AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631331.10.0PREDICTED: F-box protein SKIP22
TrEMBLA0A0D9VRK50.0A0A0D9VRK5_9ORYZ; Uncharacterized protein
STRINGBGIOSGA011171-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.18e-43bHLH family protein